No. words: 1309; after pruning: 1269


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:619)  600  0.32 0.16 0.32  USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1        1   621 (27)  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1   (41)   620     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1   661 
  181    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   139 
  217  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1   445 
  221    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   179 
  269  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1   393 
  273    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   231 
  301  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1   361 
  345    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   303 
  413  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1   249 
  445    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   403 
  453  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1   209 
  461    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   419 
  465  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1   197 
  489    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   447 
  497  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1   165 
  509    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   467 
  533  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1   129 
  549    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   507 
  561  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1   101 
  569    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   527 
  589  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1    73 
  597    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   555 
  621  C USDA032R_H04_BE443835Td08P057B01P037B091R1_018.ab1    41 
  625    USDA032F_H04_BE443835Td08P057B01P037B091F1_018.ab1   583 
Contig length: old 689, new 690

Contig length: old 690, new 690
New start: 0