No. words: 1106; after pruning: 1080


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.6 (1,1:510)  500  0.00 0.00 0.39  USDA032F_A02_BE443835Td09P057A01P037B091F1_016.ab1        1   512 (37)  C USDA032R_A02_BE443835Td09P057A01P037B091R1_016.ab1   (47)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C USDA032R_A02_BE443835Td09P057A01P037B091R1_016.ab1   557 
   63    USDA032F_A02_BE443835Td09P057A01P037B091F1_016.ab1    16 
   75  C USDA032R_A02_BE443835Td09P057A01P037B091R1_016.ab1   483 
   79    USDA032F_A02_BE443835Td09P057A01P037B091F1_016.ab1    32 
   83  C USDA032R_A02_BE443835Td09P057A01P037B091R1_016.ab1   475 
   91    USDA032F_A02_BE443835Td09P057A01P037B091F1_016.ab1    44 
  115  C USDA032R_A02_BE443835Td09P057A01P037B091R1_016.ab1   443 
  123    USDA032F_A02_BE443835Td09P057A01P037B091F1_016.ab1    76 
  139  C USDA032R_A02_BE443835Td09P057A01P037B091R1_016.ab1   419 
  143    USDA032F_A02_BE443835Td09P057A01P037B091F1_016.ab1    96 
  267  C USDA032R_A02_BE443835Td09P057A01P037B091R1_016.ab1   291 
  287    USDA032F_A02_BE443835Td09P057A01P037B091F1_016.ab1   240 
Contig length: old 595, new 596

Contig length: old 596, new 596
New start: 0