No. words: 1122; after pruning: 1096


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:618)  461  0.00 0.00 0.21  USDA032F_A05_BE443835Td09P057B01P037B091F1_047.ab1      153   620 (35)  C USDA032R_A05_BE443835Td09P057B01P037B091R1_047.ab1   (0)   467     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1    USDA032F_A05_BE443835Td09P057B01P037B091F1_047.ab1     1 
  296  C USDA032R_A05_BE443835Td09P057B01P037B091R1_047.ab1   324 
  308    USDA032F_A05_BE443835Td09P057B01P037B091F1_047.ab1   308 
  312  C USDA032R_A05_BE443835Td09P057B01P037B091R1_047.ab1   308 
  448    USDA032F_A05_BE443835Td09P057B01P037B091F1_047.ab1   448 
  492  C USDA032R_A05_BE443835Td09P057B01P037B091R1_047.ab1   128 
  508    USDA032F_A05_BE443835Td09P057B01P037B091F1_047.ab1   508 
  544  C USDA032R_A05_BE443835Td09P057B01P037B091R1_047.ab1    76 
  556    USDA032F_A05_BE443835Td09P057B01P037B091F1_047.ab1   556 
Contig length: old 655, new 655

Contig length: old 655, new 655
New start: 0