No. words: 1124; after pruning: 1098


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.6 (1,1:620)  458  0.00 0.00 0.43  USDA032F_B05_BE443835Td10P057B01P037B091F1_045.ab1      154   623 (33)  C USDA032R_B05_BE443835Td10P057B01P037B091R1_045.ab1   (0)   468     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1    USDA032F_B05_BE443835Td10P057B01P037B091F1_045.ab1     1 
  219  C USDA032R_B05_BE443835Td10P057B01P037B091R1_045.ab1   403 
  303    USDA032F_B05_BE443835Td10P057B01P037B091F1_045.ab1   303 
  331  C USDA032R_B05_BE443835Td10P057B01P037B091R1_045.ab1   291 
  467    USDA032F_B05_BE443835Td10P057B01P037B091F1_045.ab1   467 
  471  C USDA032R_B05_BE443835Td10P057B01P037B091R1_045.ab1   151 
  475    USDA032F_B05_BE443835Td10P057B01P037B091F1_045.ab1   475 
  491  C USDA032R_B05_BE443835Td10P057B01P037B091R1_045.ab1   131 
  507    USDA032F_B05_BE443835Td10P057B01P037B091F1_045.ab1   507 
  523  C USDA032R_B05_BE443835Td10P057B01P037B091R1_045.ab1    99 
  531    USDA032F_B05_BE443835Td10P057B01P037B091F1_045.ab1   531 
  539  C USDA032R_B05_BE443835Td10P057B01P037B091R1_045.ab1    83 
  555    USDA032F_B05_BE443835Td10P057B01P037B091F1_045.ab1   555 
Contig length: old 656, new 656

Contig length: old 656, new 656
New start: 0