No. words: 1511; after pruning: 1415


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:747)  716  1.09 0.00 0.00  USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1       17   748 (31)  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1   (0)   732     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1     1 
   20  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1   729 
   68    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1    68 
   72  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1   677 
   88    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1    88 
  168  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1   581 
  172    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1   172 
  188  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1   561 
  212    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1   212 
  220  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1   529 
  293    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1   293 
  313  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1   436 
  337    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1   337 
  341  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1   408 
  361    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1   361 
  385  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1   364 
  389    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1   389 
  397  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1   352 
  413    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1   413 
  516  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1   233 
  654    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1   654 
  693  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1    56 
  701    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1   701 
  725  C USDA016R_B01_BE443835Tu02P037B03P037B091R1_013.ab1    24 
  729    USDA016F_B01_BE443835Tu02P037B03P037B091F1_013.ab1   729 
Contig length: old 779, new 779

Contig length: old 779, new 779
New start: 0 
S Change at: 719; seg lengths: entry 3, contig 3