No. words: 1028; after pruning: 1002


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.3 (1,1:873)  132  3.25 0.00 0.65  USDA013F_D07_BE444305As02P032B01P032B07F1_057.ab1       12   165 (0)  C USDA013R_D07_BE444305As02P032B01P032B07R1_057.ab1   (0)   863   711 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  62 nodes

 33 str. conn. components

Path
    1    USDA013F_D07_BE444305As02P032B01P032B07F1_057.ab1     1 
   89  C USDA013R_D07_BE444305As02P032B01P032B07R1_057.ab1   787 
   93    USDA013F_D07_BE444305As02P032B01P032B07F1_057.ab1    93 
  105  C USDA013R_D07_BE444305As02P032B01P032B07R1_057.ab1   771 
  113    USDA013F_D07_BE444305As02P032B01P032B07F1_057.ab1   113 
  148  C USDA013R_D07_BE444305As02P032B01P032B07R1_057.ab1   728 
Contig length: old 874, new 875

Contig length: old 875, new 875
New start: 0 
S Change at: 54; seg lengths: entry 1, contig 1