No. words: 1248; after pruning: 1222


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.4 (1,1:875)  359  0.54 0.00 0.00  USDA013F_E07_BE444305At01P032B01P032B07F1_055.ab1        5   375 (0)  C USDA013R_E07_BE444305At01P032B01P032B07R1_055.ab1   (1)   872   502 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  182 nodes

 93 str. conn. components

Path
    1    USDA013F_E07_BE444305At01P032B01P032B07F1_055.ab1     1 
    8  C USDA013R_E07_BE444305At01P032B01P032B07R1_055.ab1   869 
   12    USDA013F_E07_BE444305At01P032B01P032B07F1_055.ab1    12 
   52  C USDA013R_E07_BE444305At01P032B01P032B07R1_055.ab1   825 
   56    USDA013F_E07_BE444305At01P032B01P032B07F1_055.ab1    56 
  192  C USDA013R_E07_BE444305At01P032B01P032B07R1_055.ab1   685 
  196    USDA013F_E07_BE444305At01P032B01P032B07F1_055.ab1   196 
  204  C USDA013R_E07_BE444305At01P032B01P032B07R1_055.ab1   673 
  216    USDA013F_E07_BE444305At01P032B01P032B07F1_055.ab1   216 
  220  C USDA013R_E07_BE444305At01P032B01P032B07R1_055.ab1   657 
  224    USDA013F_E07_BE444305At01P032B01P032B07F1_055.ab1   224 
  232  C USDA013R_E07_BE444305At01P032B01P032B07R1_055.ab1   645 
  236    USDA013F_E07_BE444305At01P032B01P032B07F1_055.ab1   236 
  244  C USDA013R_E07_BE444305At01P032B01P032B07R1_055.ab1   633 
Contig length: old 876, new 876

Contig length: old 876, new 876
New start: 0