No. words: 1249; after pruning: 1223


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:873)  371  0.00 0.00 0.00  USDA013F_H07_BE444305Ld02P032B01P032B07F1_049.ab1       57   431 (0)  C USDA013R_H07_BE444305Ld02P032B01P032B07R1_049.ab1   (0)   818   444 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1    USDA013F_H07_BE444305Ld02P032B01P032B07F1_049.ab1     1 
  180  C USDA013R_H07_BE444305Ld02P032B01P032B07R1_049.ab1   695 
  188    USDA013F_H07_BE444305Ld02P032B01P032B07F1_049.ab1   188 
  212  C USDA013R_H07_BE444305Ld02P032B01P032B07R1_049.ab1   663 
  216    USDA013F_H07_BE444305Ld02P032B01P032B07F1_049.ab1   216 
  252  C USDA013R_H07_BE444305Ld02P032B01P032B07R1_049.ab1   623 
  264    USDA013F_H07_BE444305Ld02P032B01P032B07F1_049.ab1   264 
  272  C USDA013R_H07_BE444305Ld02P032B01P032B07R1_049.ab1   603 
  276    USDA013F_H07_BE444305Ld02P032B01P032B07F1_049.ab1   276 
  280  C USDA013R_H07_BE444305Ld02P032B01P032B07R1_049.ab1   595 
Contig length: old 874, new 874

Contig length: old 874, new 874
New start: 0