No. words: 1064; after pruning: 1038


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.2 (1,1:892)  161  1.17 0.00 0.00  USDA013F_A08_BE444305Ld03P032B01P032B07F1_064.ab1       30   200 (0)  C USDA013R_A08_BE444305Ld03P032B01P032B07R1_064.ab1   (0)   864   694 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    USDA013F_A08_BE444305Ld03P032B01P032B07F1_064.ab1     1 
   54  C USDA013R_A08_BE444305Ld03P032B01P032B07R1_064.ab1   840 
   58    USDA013F_A08_BE444305Ld03P032B01P032B07F1_064.ab1    58 
   98  C USDA013R_A08_BE444305Ld03P032B01P032B07R1_064.ab1   796 
  106    USDA013F_A08_BE444305Ld03P032B01P032B07F1_064.ab1   106 
  118  C USDA013R_A08_BE444305Ld03P032B01P032B07R1_064.ab1   776 
  145    USDA013F_A08_BE444305Ld03P032B01P032B07F1_064.ab1   145 
  149  C USDA013R_A08_BE444305Ld03P032B01P032B07R1_064.ab1   745 
  157    USDA013F_A08_BE444305Ld03P032B01P032B07F1_064.ab1   157 
  161  C USDA013R_A08_BE444305Ld03P032B01P032B07R1_064.ab1   733 
Contig length: old 893, new 893

Contig length: old 893, new 893
New start: 0