No. words: 1382; after pruning: 1356


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.6 (1,1:883)  487  0.20 0.00 0.00  USDA013F_C08_BE444305Ld05P032B01P032B07F1_060.ab1       30   526 (0)  C USDA013R_C08_BE444305Ld05P032B01P032B07R1_060.ab1   (1)   855   359 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1    USDA013F_C08_BE444305Ld05P032B01P032B07F1_060.ab1     1 
   60  C USDA013R_C08_BE444305Ld05P032B01P032B07R1_060.ab1   825 
   64    USDA013F_C08_BE444305Ld05P032B01P032B07F1_060.ab1    64 
  176  C USDA013R_C08_BE444305Ld05P032B01P032B07R1_060.ab1   709 
  192    USDA013F_C08_BE444305Ld05P032B01P032B07F1_060.ab1   192 
  200  C USDA013R_C08_BE444305Ld05P032B01P032B07R1_060.ab1   685 
  204    USDA013F_C08_BE444305Ld05P032B01P032B07F1_060.ab1   204 
  212  C USDA013R_C08_BE444305Ld05P032B01P032B07R1_060.ab1   673 
  236    USDA013F_C08_BE444305Ld05P032B01P032B07F1_060.ab1   236 
  240  C USDA013R_C08_BE444305Ld05P032B01P032B07R1_060.ab1   645 
  276    USDA013F_C08_BE444305Ld05P032B01P032B07F1_060.ab1   276 
  280  C USDA013R_C08_BE444305Ld05P032B01P032B07R1_060.ab1   605 
  284    USDA013F_C08_BE444305Ld05P032B01P032B07F1_060.ab1   284 
  288  C USDA013R_C08_BE444305Ld05P032B01P032B07R1_060.ab1   597 
Contig length: old 884, new 884

Contig length: old 884, new 884
New start: 0