No. words: 1066; after pruning: 1040


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 1.0 (1,1:882)  167  2.20 0.00 0.00  USDA013F_E08_BE444305Ld07P032B01P032B07F1_056.ab1       86   267 (1)  C USDA013R_E08_BE444305Ld07P032B01P032B07R1_056.ab1   (0)   798   617 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    USDA013F_E08_BE444305Ld07P032B01P032B07F1_056.ab1     1 
  157  C USDA013R_E08_BE444305Ld07P032B01P032B07R1_056.ab1   727 
  165    USDA013F_E08_BE444305Ld07P032B01P032B07F1_056.ab1   165 
  181  C USDA013R_E08_BE444305Ld07P032B01P032B07R1_056.ab1   703 
  204    USDA013F_E08_BE444305Ld07P032B01P032B07F1_056.ab1   204 
  208  C USDA013R_E08_BE444305Ld07P032B01P032B07R1_056.ab1   676 
  216    USDA013F_E08_BE444305Ld07P032B01P032B07F1_056.ab1   216 
  224  C USDA013R_E08_BE444305Ld07P032B01P032B07R1_056.ab1   660 
Contig length: old 883, new 883

Contig length: old 883, new 883
New start: 0