No. words: 1312; after pruning: 1286


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:887)  420  0.00 0.00 0.00  USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1       76   499 (0)  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   (0)   813   390 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1    USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1     1 
  163  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   726 
  167    USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1   167 
  187  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   702 
  195    USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1   195 
  203  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   686 
  207    USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1   207 
  215  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   674 
  219    USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1   219 
  239  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   650 
  247    USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1   247 
  255  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   634 
  259    USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1   259 
  263  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   626 
  267    USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1   267 
  275  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   614 
  279    USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1   279 
  283  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   606 
  287    USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1   287 
  291  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   598 
  295    USDA013F_F08_BE444305Ld08P032B01P032B07F1_054.ab1   295 
  299  C USDA013R_F08_BE444305Ld08P032B01P032B07R1_054.ab1   590 
Contig length: old 888, new 888

Contig length: old 888, new 888
New start: 0