No. words: 1430; after pruning: 1404


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:888)  533  0.18 0.00 0.00  USDA013F_H08_BE444305Ld10P032B01P032B07F1_050.ab1       63   603 (0)  C USDA013R_H08_BE444305Ld10P032B01P032B07R1_050.ab1   (0)   827   287 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1    USDA013F_H08_BE444305Ld10P032B01P032B07F1_050.ab1     1 
  318  C USDA013R_H08_BE444305Ld10P032B01P032B07R1_050.ab1   572 
  346    USDA013F_H08_BE444305Ld10P032B01P032B07F1_050.ab1   346 
  350  C USDA013R_H08_BE444305Ld10P032B01P032B07R1_050.ab1   540 
Contig length: old 889, new 889

Contig length: old 889, new 889
New start: 0