No. words: 1524; after pruning: 1484


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:715)  695  0.00 0.00 0.42  USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1        1   718 (49)  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   (42)   715     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   757 
   57    USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1    15 
   85  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   673 
   89    USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1    47 
  121  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   637 
  125    USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1    83 
  153  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   605 
  209    USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1   167 
  221  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   537 
  241    USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1   199 
  245  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   513 
  273    USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1   231 
  281  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   477 
  285    USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1   243 
  293  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   465 
  309    USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1   267 
  325  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   433 
  369    USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1   327 
  377  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   381 
  601    USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1   559 
  605  C USDA026R_C05_BE444305Ta11P043C03P032B011R1_043.ab1   153 
  754    USDA026F_C05_BE444305Ta11P043C03P032B011F1_043.ab1   715 
Contig length: old 808, new 806

Contig length: old 806, new 808
New start: 0 
I Change at: 737; seg lengths: entry 2, contig 0