No. words: 1294; after pruning: 1268


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.8 (1,1:611)  597  0.00 0.00 0.16  USDA026F_C08_BE444305Ta11P043D03P032B011F1_060.ab1        1   609 (33)  C USDA026R_C08_BE444305Ta11P043D03P032B011R1_060.ab1   (41)   611     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C USDA026R_C08_BE444305Ta11P043D03P032B011R1_060.ab1   652 
   53    USDA026F_C08_BE444305Ta11P043D03P032B011F1_060.ab1    12 
   61  C USDA026R_C08_BE444305Ta11P043D03P032B011R1_060.ab1   592 
   65    USDA026F_C08_BE444305Ta11P043D03P032B011F1_060.ab1    24 
   69  C USDA026R_C08_BE444305Ta11P043D03P032B011R1_060.ab1   584 
   73    USDA026F_C08_BE444305Ta11P043D03P032B011F1_060.ab1    32 
   93  C USDA026R_C08_BE444305Ta11P043D03P032B011R1_060.ab1   560 
  161    USDA026F_C08_BE444305Ta11P043D03P032B011F1_060.ab1   120 
  177  C USDA026R_C08_BE444305Ta11P043D03P032B011R1_060.ab1   476 
  365    USDA026F_C08_BE444305Ta11P043D03P032B011F1_060.ab1   324 
  513  C USDA026R_C08_BE444305Ta11P043D03P032B011R1_060.ab1   140 
  529    USDA026F_C08_BE444305Ta11P043D03P032B011F1_060.ab1   488 
  573  C USDA026R_C08_BE444305Ta11P043D03P032B011R1_060.ab1    80 
  577    USDA026F_C08_BE444305Ta11P043D03P032B011F1_060.ab1   536 
  597  C USDA026R_C08_BE444305Ta11P043D03P032B011R1_060.ab1    56 
  601    USDA026F_C08_BE444305Ta11P043D03P032B011F1_060.ab1   560 
Contig length: old 682, new 683

Contig length: old 683, new 683
New start: 0