No. words: 1470; after pruning: 1444


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:722)  694  0.00 0.00 0.00  USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1        1   703 (0)  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   (44)   723    21 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   767 
   57    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1    13 
   81  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   687 
   89    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1    45 
  149  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   619 
  161    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   117 
  193  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   575 
  245    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   201 
  249  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   519 
  309    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   265 
  337  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   431 
  341    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   297 
  353  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   415 
  369    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   325 
  381  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   387 
  401    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   357 
  433  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   335 
  445    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   401 
  453  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   315 
  461    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   417 
  481  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   287 
  513    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   469 
  525  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   243 
  549    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   505 
  557  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   211 
  601    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   557 
  609  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1   159 
  697    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   653 
  713  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1    55 
  737    USDA026F_D05_BE444305Ta12P043C03P032B011F1_041.ab1   693 
  741  C USDA026R_D05_BE444305Ta12P043C03P032B011R1_041.ab1    27 
Contig length: old 767, new 767

Contig length: old 767, new 767
New start: 0