No. words: 1489; after pruning: 1463


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:714)  697  0.00 0.00 0.28  USDA026F_E05_BE444305Ta13P043C03P032B011F1_039.ab1        1   716 (15)  C USDA026R_E05_BE444305Ta13P043C03P032B011R1_039.ab1   (44)   714     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C USDA026R_E05_BE444305Ta13P043C03P032B011R1_039.ab1   758 
   57    USDA026F_E05_BE444305Ta13P043C03P032B011F1_039.ab1    13 
   77  C USDA026R_E05_BE444305Ta13P043C03P032B011R1_039.ab1   682 
  101    USDA026F_E05_BE444305Ta13P043C03P032B011F1_039.ab1    57 
  105  C USDA026R_E05_BE444305Ta13P043C03P032B011R1_039.ab1   654 
  113    USDA026F_E05_BE444305Ta13P043C03P032B011F1_039.ab1    69 
  121  C USDA026R_E05_BE444305Ta13P043C03P032B011R1_039.ab1   638 
  145    USDA026F_E05_BE444305Ta13P043C03P032B011F1_039.ab1   101 
  153  C USDA026R_E05_BE444305Ta13P043C03P032B011R1_039.ab1   606 
  401    USDA026F_E05_BE444305Ta13P043C03P032B011F1_039.ab1   357 
  409  C USDA026R_E05_BE444305Ta13P043C03P032B011R1_039.ab1   350 
  501    USDA026F_E05_BE444305Ta13P043C03P032B011F1_039.ab1   457 
  509  C USDA026R_E05_BE444305Ta13P043C03P032B011R1_039.ab1   250 
  549    USDA026F_E05_BE444305Ta13P043C03P032B011F1_039.ab1   505 
  557  C USDA026R_E05_BE444305Ta13P043C03P032B011R1_039.ab1   202 
  565    USDA026F_E05_BE444305Ta13P043C03P032B011F1_039.ab1   521 
  569  C USDA026R_E05_BE444305Ta13P043C03P032B011R1_039.ab1   190 
  738    USDA026F_E05_BE444305Ta13P043C03P032B011F1_039.ab1   695 
Contig length: old 774, new 774

Contig length: old 774, new 775
New start: 0 
I Change at: 737; seg lengths: entry 1, contig 0