No. words: 1286; after pruning: 1260


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.7 (1,1:598)  590  0.00 0.00 0.00  USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1        4   599 (53)  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1   (38)   596     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1   634 
   58    USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1    23 
   70  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1   565 
   74    USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1    39 
   82  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1   553 
   86    USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1    51 
   94  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1   541 
  114    USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1    79 
  146  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1   489 
  162    USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1   127 
  182  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1   453 
  194    USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1   159 
  294  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1   341 
  298    USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1   263 
  326  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1   309 
  330    USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1   295 
  346  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1   289 
  354    USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1   319 
  522  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1   113 
  526    USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1   491 
  602  C USDA026R_E08_BE444305Ta13P043D03P032B011R1_056.ab1    33 
  606    USDA026F_E08_BE444305Ta13P043D03P032B011F1_056.ab1   571 
Contig length: old 687, new 687

Contig length: old 687, new 687
New start: 0