No. words: 1500; after pruning: 1460


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 14.8 (1,1:724)  705  0.28 0.00 0.14  USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1        1   723 (8)  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   (45)   724     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   769 
   59    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1    14 
   79  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   691 
   83    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1    38 
  135  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   635 
  139    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1    94 
  155  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   615 
  175    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   130 
  179  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   591 
  203    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   158 
  207  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   563 
  227    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   182 
  231  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   539 
  263    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   218 
  271  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   499 
  275    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   230 
  295  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   475 
  311    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   266 
  323  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   447 
  335    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   290 
  339  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   431 
  355    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   310 
  359  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   411 
  383    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   338 
  387  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   383 
  423    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   378 
  471  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   299 
  603    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   558 
  607  C USDA026R_G05_BE444305Ta15P043C03P032B011R1_035.ab1   163 
  741    USDA026F_G05_BE444305Ta15P043C03P032B011F1_035.ab1   696 
Contig length: old 775, new 776

Contig length: old 776, new 776
New start: 0