No. words: 1304; after pruning: 1278


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.2 (1,1:620)  605  0.00 0.00 0.16  USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1        4   619 (34)  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1   (34)   617     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1   651 
   50    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1    19 
   58  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1   594 
   62    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1    31 
   66  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1   586 
   70    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1    39 
   94  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1   558 
  230    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1   199 
  290  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1   362 
  366    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1   335 
  374  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1   278 
  414    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1   383 
  418  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1   234 
  438    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1   407 
  466  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1   186 
  526    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1   495 
  538  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1   114 
  550    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1   519 
  558  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1    94 
  562    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1   531 
  574  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1    78 
  578    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1   547 
  594  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1    58 
  606    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1   575 
  610  C USDA026R_A09_BE444305Ta17P043D03P032B011R1_079.ab1    42 
  614    USDA026F_A09_BE444305Ta17P043D03P032B011F1_079.ab1   583 
Contig length: old 683, new 684

Contig length: old 684, new 684
New start: 0