No. words: 1498; after pruning: 1472


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 14.7 (1,1:723)  708  0.00 0.00 0.14  USDA026F_B06_BE444305Ta18P043C03P032B011F1_046.ab1        1   722 (11)  C USDA026R_B06_BE444305Ta18P043C03P032B011R1_046.ab1   (42)   723     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1  C USDA026R_B06_BE444305Ta18P043C03P032B011R1_046.ab1   765 
   59    USDA026F_B06_BE444305Ta18P043C03P032B011F1_046.ab1    17 
   75  C USDA026R_B06_BE444305Ta18P043C03P032B011R1_046.ab1   691 
   87    USDA026F_B06_BE444305Ta18P043C03P032B011F1_046.ab1    45 
  103  C USDA026R_B06_BE444305Ta18P043C03P032B011R1_046.ab1   663 
  107    USDA026F_B06_BE444305Ta18P043C03P032B011F1_046.ab1    65 
  279  C USDA026R_B06_BE444305Ta18P043C03P032B011R1_046.ab1   487 
  555    USDA026F_B06_BE444305Ta18P043C03P032B011F1_046.ab1   513 
  571  C USDA026R_B06_BE444305Ta18P043C03P032B011R1_046.ab1   195 
  587    USDA026F_B06_BE444305Ta18P043C03P032B011F1_046.ab1   545 
  591  C USDA026R_B06_BE444305Ta18P043C03P032B011R1_046.ab1   175 
  599    USDA026F_B06_BE444305Ta18P043C03P032B011F1_046.ab1   557 
  603  C USDA026R_B06_BE444305Ta18P043C03P032B011R1_046.ab1   163 
  643    USDA026F_B06_BE444305Ta18P043C03P032B011F1_046.ab1   601 
  651  C USDA026R_B06_BE444305Ta18P043C03P032B011R1_046.ab1   115 
  659    USDA026F_B06_BE444305Ta18P043C03P032B011F1_046.ab1   617 
  667  C USDA026R_B06_BE444305Ta18P043C03P032B011R1_046.ab1    99 
  679    USDA026F_B06_BE444305Ta18P043C03P032B011F1_046.ab1   637 
  683  C USDA026R_B06_BE444305Ta18P043C03P032B011R1_046.ab1    83 
  735    USDA026F_B06_BE444305Ta18P043C03P032B011F1_046.ab1   693 
Contig length: old 774, new 775

Contig length: old 775, new 775
New start: 0