No. words: 1318; after pruning: 1292


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.7 (1,1:621)  606  0.00 0.16 0.16  USDA026F_B09_BE444305Ta18P043D03P032B011F1_077.ab1        1   621 (34)  C USDA026R_B09_BE444305Ta18P043D03P032B011R1_077.ab1   (41)   622     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C USDA026R_B09_BE444305Ta18P043D03P032B011R1_077.ab1   663 
   68    USDA026F_B09_BE444305Ta18P043D03P032B011F1_077.ab1    26 
   72  C USDA026R_B09_BE444305Ta18P043D03P032B011R1_077.ab1   592 
   84    USDA026F_B09_BE444305Ta18P043D03P032B011F1_077.ab1    42 
   88  C USDA026R_B09_BE444305Ta18P043D03P032B011R1_077.ab1   576 
  100    USDA026F_B09_BE444305Ta18P043D03P032B011F1_077.ab1    58 
  104  C USDA026R_B09_BE444305Ta18P043D03P032B011R1_077.ab1   560 
  268    USDA026F_B09_BE444305Ta18P043D03P032B011F1_077.ab1   226 
  320  C USDA026R_B09_BE444305Ta18P043D03P032B011R1_077.ab1   344 
  416    USDA026F_B09_BE444305Ta18P043D03P032B011F1_077.ab1   374 
  420  C USDA026R_B09_BE444305Ta18P043D03P032B011R1_077.ab1   244 
  452    USDA026F_B09_BE444305Ta18P043D03P032B011F1_077.ab1   410 
  468  C USDA026R_B09_BE444305Ta18P043D03P032B011R1_077.ab1   196 
  540    USDA026F_B09_BE444305Ta18P043D03P032B011F1_077.ab1   498 
  548  C USDA026R_B09_BE444305Ta18P043D03P032B011R1_077.ab1   116 
  572    USDA026F_B09_BE444305Ta18P043D03P032B011F1_077.ab1   530 
  584  C USDA026R_B09_BE444305Ta18P043D03P032B011R1_077.ab1    80 
  592    USDA026F_B09_BE444305Ta18P043D03P032B011F1_077.ab1   550 
  608  C USDA026R_B09_BE444305Ta18P043D03P032B011R1_077.ab1    56 
  616    USDA026F_B09_BE444305Ta18P043D03P032B011F1_077.ab1   574 
Contig length: old 696, new 697

Contig length: old 697, new 697
New start: 0