No. words: 1496; after pruning: 1470


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:718)  705  0.00 0.00 0.14  USDA026F_C06_BE444305Ta19P043C03P032B011F1_044.ab1        1   719 (16)  C USDA026R_C06_BE444305Ta19P043C03P032B011R1_044.ab1   (43)   718     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C USDA026R_C06_BE444305Ta19P043C03P032B011R1_044.ab1   761 
   58    USDA026F_C06_BE444305Ta19P043C03P032B011F1_044.ab1    15 
   78  C USDA026R_C06_BE444305Ta19P043C03P032B011R1_044.ab1   684 
   82    USDA026F_C06_BE444305Ta19P043C03P032B011F1_044.ab1    39 
   98  C USDA026R_C06_BE444305Ta19P043C03P032B011R1_044.ab1   664 
  102    USDA026F_C06_BE444305Ta19P043C03P032B011F1_044.ab1    59 
  490  C USDA026R_C06_BE444305Ta19P043C03P032B011R1_044.ab1   272 
  558    USDA026F_C06_BE444305Ta19P043C03P032B011F1_044.ab1   515 
  570  C USDA026R_C06_BE444305Ta19P043C03P032B011R1_044.ab1   192 
  602    USDA026F_C06_BE444305Ta19P043C03P032B011F1_044.ab1   559 
  606  C USDA026R_C06_BE444305Ta19P043C03P032B011R1_044.ab1   156 
  662    USDA026F_C06_BE444305Ta19P043C03P032B011F1_044.ab1   619 
  686  C USDA026R_C06_BE444305Ta19P043C03P032B011R1_044.ab1    76 
  698    USDA026F_C06_BE444305Ta19P043C03P032B011F1_044.ab1   655 
  702  C USDA026R_C06_BE444305Ta19P043C03P032B011R1_044.ab1    60 
  730    USDA026F_C06_BE444305Ta19P043C03P032B011F1_044.ab1   687 
Contig length: old 777, new 778

Contig length: old 778, new 778
New start: 0