No. words: 1527; after pruning: 1501


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:725)  709  0.00 0.00 0.28  USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1        1   727 (39)  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   (36)   725     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   761 
   48    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1    12 
   52  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   710 
   56    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1    20 
   84  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   678 
   88    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1    52 
  196  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   566 
  244    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1   208 
  288  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   474 
  336    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1   300 
  340  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   422 
  372    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1   336 
  408  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   354 
  484    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1   448 
  488  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   274 
  548    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1   512 
  552  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   210 
  588    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1   552 
  592  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   170 
  600    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1   564 
  608  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   154 
  648    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1   612 
  652  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1   110 
  676    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1   640 
  680  C USDA026R_D06_BE444305Ta20P043C03P032B011R1_042.ab1    82 
  736    USDA026F_D06_BE444305Ta20P043C03P032B011F1_042.ab1   701 
Contig length: old 801, new 801

Contig length: old 801, new 801
New start: 0