No. words: 1313; after pruning: 1287


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.7 (1,1:619)  605  0.00 0.00 0.16  USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1        4   619 (34)  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   (44)   616     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   660 
   60    USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1    19 
   84  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   577 
   96    USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1    55 
  104  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   557 
  120    USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1    79 
  128  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   533 
  156    USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1   115 
  164  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   497 
  172    USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1   131 
  176  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   485 
  200    USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1   159 
  248  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   413 
  264    USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1   223 
  320  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   341 
  336    USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1   295 
  344  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   317 
  364    USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1   323 
  380  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   281 
  392    USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1   351 
  496  C USDA026R_D09_BE444305Ta20P043D03P032B011R1_073.ab1   165 
  532    USDA026F_D09_BE444305Ta20P043D03P032B011F1_073.ab1   491 
Contig length: old 693, new 694

Contig length: old 694, new 694
New start: 0