No. words: 1520; after pruning: 1494


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 14.7 (1,1:723)  708  0.00 0.00 0.14  USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1        1   722 (31)  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   (44)   723     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   767 
   57    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1    13 
   81  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   687 
   93    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1    49 
   97  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   671 
  101    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1    57 
  233  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   535 
  305    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1   261 
  321  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   447 
  333    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1   289 
  357  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   411 
  449    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1   405 
  457  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   311 
  497    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1   453 
  521  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   247 
  529    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1   485 
  537  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   231 
  549    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1   505 
  605  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   163 
  661    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1   617 
  665  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1   103 
  677    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1   633 
  681  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1    87 
  701    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1   657 
  705  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1    63 
  729    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1   685 
  733  C USDA026R_E06_BE444305Ta21P043C03P032B011R1_040.ab1    35 
  737    USDA026F_E06_BE444305Ta21P043C03P032B011F1_040.ab1   693 
Contig length: old 796, new 797

Contig length: old 797, new 797
New start: 0