No. words: 1526; after pruning: 1500


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.7 (1,1:726)  710  0.00 0.00 0.14  USDA026F_F06_BE444305Ta22P043C03P032B011F1_038.ab1        1   724 (34)  C USDA026R_F06_BE444305Ta22P043C03P032B011R1_038.ab1   (42)   726     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1  C USDA026R_F06_BE444305Ta22P043C03P032B011R1_038.ab1   768 
   57    USDA026F_F06_BE444305Ta22P043C03P032B011F1_038.ab1    15 
   73  C USDA026R_F06_BE444305Ta22P043C03P032B011R1_038.ab1   696 
   93    USDA026F_F06_BE444305Ta22P043C03P032B011F1_038.ab1    51 
  121  C USDA026R_F06_BE444305Ta22P043C03P032B011R1_038.ab1   648 
  153    USDA026F_F06_BE444305Ta22P043C03P032B011F1_038.ab1   111 
  193  C USDA026R_F06_BE444305Ta22P043C03P032B011R1_038.ab1   576 
  197    USDA026F_F06_BE444305Ta22P043C03P032B011F1_038.ab1   155 
  221  C USDA026R_F06_BE444305Ta22P043C03P032B011R1_038.ab1   548 
  401    USDA026F_F06_BE444305Ta22P043C03P032B011F1_038.ab1   359 
  409  C USDA026R_F06_BE444305Ta22P043C03P032B011R1_038.ab1   360 
  737    USDA026F_F06_BE444305Ta22P043C03P032B011F1_038.ab1   695 
Contig length: old 799, new 800

Contig length: old 800, new 800
New start: 0