No. words: 1238; after pruning: 1212


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:610)  542  1.57 0.00 0.00  USDA026F_F09_BE444305Ta22P043D03P032B011F1_069.ab1        1   575 (0)  C USDA026R_F09_BE444305Ta22P043D03P032B011R1_069.ab1   (52)   611    37 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C USDA026R_F09_BE444305Ta22P043D03P032B011R1_069.ab1   663 
   68    USDA026F_F09_BE444305Ta22P043D03P032B011F1_069.ab1    16 
   72  C USDA026R_F09_BE444305Ta22P043D03P032B011R1_069.ab1   592 
  170    USDA026F_F09_BE444305Ta22P043D03P032B011F1_069.ab1   118 
  174  C USDA026R_F09_BE444305Ta22P043D03P032B011R1_069.ab1   490 
  226    USDA026F_F09_BE444305Ta22P043D03P032B011F1_069.ab1   174 
  350  C USDA026R_F09_BE444305Ta22P043D03P032B011R1_069.ab1   314 
  374    USDA026F_F09_BE444305Ta22P043D03P032B011F1_069.ab1   322 
  386  C USDA026R_F09_BE444305Ta22P043D03P032B011R1_069.ab1   278 
Contig length: old 663, new 663

Contig length: old 663, new 663
New start: 0