No. words: 1482; after pruning: 1456


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:716)  703  0.00 0.00 0.14  USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1        1   717 (3)  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   (46)   716     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   762 
   52    USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1     6 
   56  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   707 
   60    USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1    14 
   80  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   683 
   96    USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1    50 
  100  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   663 
  104    USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1    58 
  124  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   639 
  136    USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1    90 
  148  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   615 
  180    USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1   134 
  192  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   571 
  216    USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1   170 
  220  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   543 
  228    USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1   182 
  232  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   531 
  288    USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1   242 
  296  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   467 
  404    USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1   358 
  412  C USDA026R_G06_BE444305Ta23P043C03P032B011R1_036.ab1   351 
  758    USDA026F_G06_BE444305Ta23P043C03P032B011F1_036.ab1   713 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0