No. words: 1510; after pruning: 1484


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 15.5 (1,1:732)  718  0.00 0.00 0.14  USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1        1   731 (11)  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   (36)   732     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   768 
   48    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1    12 
   52  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   717 
   56    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1    20 
   76  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   693 
   80    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1    44 
   88  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   681 
   92    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1    56 
   96  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   673 
  112    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1    76 
  192  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   577 
  276    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1   240 
  288  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   481 
  480    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1   444 
  492  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   277 
  556    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1   520 
  572  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   197 
  600    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1   564 
  608  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   161 
  640    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1   604 
  652  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1   117 
  664    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1   628 
  672  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1    97 
  676    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1   640 
  688  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1    81 
  700    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1   664 
  708  C USDA026R_A04_BE444305Td01P043C03P032B011R1_032.ab1    61 
  736    USDA026F_A04_BE444305Td01P043C03P032B011F1_032.ab1   700 
Contig length: old 777, new 778

Contig length: old 778, new 778
New start: 0