No. words: 1516; after pruning: 1462


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:717)  703  0.28 0.00 0.14  USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1        1   718 (39)  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1   (42)   717     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1   759 
   57    USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1    15 
   73  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1   687 
   89    USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1    47 
   93  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1   667 
  137    USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1    95 
  145  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1   615 
  169    USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1   127 
  185  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1   575 
  589    USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1   547 
  593  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1   167 
  601    USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1   559 
  605  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1   155 
  661    USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1   619 
  669  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1    91 
  677    USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1   635 
  689  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1    71 
  708    USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1   666 
  712  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1    48 
  716    USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1   674 
  724  C USDA026R_B04_BE444305Td02P043C03P032B011R1_030.ab1    36 
  739    USDA026F_B04_BE444305Td02P043C03P032B011F1_030.ab1   697 
Contig length: old 798, new 799

Contig length: old 799, new 799
New start: 0