No. words: 1290; after pruning: 1264


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:596)  590  0.00 0.00 0.00  USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1        1   597 (45)  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   (51)   597     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   648 
   63    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1    12 
   71  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   578 
   83    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1    32 
  103  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   546 
  107    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1    56 
  127  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   522 
  155    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   104 
  163  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   486 
  167    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   116 
  187  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   462 
  203    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   152 
  231  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   418 
  247    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   196 
  255  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   394 
  263    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   212 
  323  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   326 
  343    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   292 
  383  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   266 
  411    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   360 
  419  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   230 
  451    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   400 
  475  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   174 
  495    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   444 
  503  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   146 
  535    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   484 
  543  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1   106 
  567    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   516 
  583  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1    66 
  587    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   536 
  607  C USDA026R_B07_BE444305Td02P043D03P032B011R1_061.ab1    42 
  611    USDA026F_B07_BE444305Td02P043D03P032B011F1_061.ab1   560 
Contig length: old 693, new 693

Contig length: old 693, new 693
New start: 0