No. words: 1522; after pruning: 1482


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 13.3 (1,1:728)  712  0.14 0.00 0.14  USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1        1   727 (28)  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   (39)   728     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   767 
   47    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1     8 
   51  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   717 
   55    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1    16 
   75  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   693 
   83    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1    44 
   87  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   681 
   91    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1    52 
   95  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   673 
  111    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1    72 
  119  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   649 
  127    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1    88 
  131  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   637 
  135    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1    96 
  147  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   621 
  179    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   140 
  191  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   577 
  343    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   304 
  359  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   409 
  371    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   332 
  395  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   373 
  447    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   408 
  455  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   313 
  555    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   516 
  559  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   209 
  563    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   524 
  571  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   197 
  599    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   560 
  607  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   161 
  647    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   608 
  655  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1   113 
  663    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   624 
  671  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1    97 
  675    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   636 
  687  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1    81 
  699    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   660 
  703  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1    65 
  707    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   668 
  711  C USDA026R_C04_BE444305Td03P043C03P032B011R1_028.ab1    57 
  743    USDA026F_C04_BE444305Td03P043C03P032B011F1_028.ab1   704 
Contig length: old 793, new 794

Contig length: old 794, new 794
New start: 0