No. words: 1298; after pruning: 1272


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.6 (1,1:610)  597  0.00 0.00 0.16  USDA026F_C07_BE444305Td03P043D03P032B011F1_059.ab1        1   609 (32)  C USDA026R_C07_BE444305Td03P043D03P032B011R1_059.ab1   (47)   610     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C USDA026R_C07_BE444305Td03P043D03P032B011R1_059.ab1   657 
   95    USDA026F_C07_BE444305Td03P043D03P032B011F1_059.ab1    48 
  103  C USDA026R_C07_BE444305Td03P043D03P032B011R1_059.ab1   555 
  167    USDA026F_C07_BE444305Td03P043D03P032B011F1_059.ab1   120 
  247  C USDA026R_C07_BE444305Td03P043D03P032B011R1_059.ab1   411 
  263    USDA026F_C07_BE444305Td03P043D03P032B011F1_059.ab1   216 
  307  C USDA026R_C07_BE444305Td03P043D03P032B011R1_059.ab1   351 
  335    USDA026F_C07_BE444305Td03P043D03P032B011F1_059.ab1   288 
  519  C USDA026R_C07_BE444305Td03P043D03P032B011R1_059.ab1   139 
  535    USDA026F_C07_BE444305Td03P043D03P032B011F1_059.ab1   488 
Contig length: old 687, new 688

Contig length: old 688, new 688
New start: 0