No. words: 1518; after pruning: 1478


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:721)  699  0.14 0.00 0.42  USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1        1   722 (30)  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1   (45)   721     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1   766 
   58    USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1    13 
   74  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1   693 
   90    USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1    45 
  122  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1   645 
  130    USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1    85 
  138  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1   629 
  142    USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1    97 
  162  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1   605 
  598    USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1   553 
  606  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1   161 
  626    USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1   581 
  634  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1   133 
  650    USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1   605 
  654  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1   113 
  678    USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1   633 
  686  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1    81 
  701    USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1   656 
  705  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1    62 
  709    USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1   664 
  713  C USDA026R_D04_BE444305Td04P043C03P032B011R1_026.ab1    54 
  733    USDA026F_D04_BE444305Td04P043C03P032B011F1_026.ab1   688 
Contig length: old 796, new 797

Contig length: old 797, new 797
New start: 0