No. words: 1309; after pruning: 1283


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.4 (1,1:610)  598  0.00 0.00 0.16  USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1        1   609 (32)  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   (58)   610     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   668 
   70    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1    12 
   78  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   591 
   86    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1    28 
   94  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   575 
   98    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1    40 
  110  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   559 
  126    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1    68 
  134  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   535 
  162    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1   104 
  170  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   499 
  174    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1   116 
  234  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   435 
  246    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1   188 
  258  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   411 
  270    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1   212 
  362  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   307 
  366    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1   308 
  394  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   275 
  414    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1   356 
  510  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   159 
  538    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1   480 
  554  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1   115 
  562    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1   504 
  594  C USDA026R_D07_BE444305Td04P043D03P032B011R1_057.ab1    75 
  598    USDA026F_D07_BE444305Td04P043D03P032B011F1_057.ab1   540 
Contig length: old 698, new 699

Contig length: old 699, new 699
New start: 0