No. words: 1516; after pruning: 1476


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:717)  700  0.14 0.00 0.28  USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1        1   719 (39)  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   (41)   717     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   758 
   45    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1     4 
   49  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   710 
   57    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1    16 
   77  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   682 
   89    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1    48 
   93  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   666 
  101    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1    60 
  125  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   634 
  129    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1    88 
  133  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   626 
  145    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   104 
  149  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   610 
  173    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   132 
  189  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   570 
  205    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   164 
  209  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   550 
  345    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   304 
  349  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   410 
  401    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   360 
  409  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   350 
  449    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   408 
  453  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   306 
  485    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   444 
  493  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   266 
  601    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   560 
  605  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   154 
  625    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   584 
  629  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   130 
  645    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   604 
  649  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1   110 
  681    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   640 
  685  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1    74 
  729    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   688 
  742  C USDA026R_E04_BE444305Td05P043C03P032B011R1_024.ab1    19 
  754    USDA026F_E04_BE444305Td05P043C03P032B011F1_024.ab1   713 
Contig length: old 798, new 799

Contig length: old 799, new 799
New start: 0