No. words: 1322; after pruning: 1296


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.1 (1,1:623)  611  0.00 0.16 0.00  USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1        1   621 (34)  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   (42)   625     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   667 
   69    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1    26 
   73  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   595 
  161    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   118 
  169  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   499 
  173    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   130 
  181  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   487 
  229    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   186 
  241  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   427 
  245    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   202 
  249  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   419 
  269    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   226 
  281  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   387 
  297    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   254 
  301  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   367 
  309    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   266 
  325  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   343 
  377    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   334 
  389  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   279 
  401    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   358 
  405  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   263 
  413    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   370 
  421  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   247 
  437    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   394 
  449  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   219 
  453    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   410 
  477  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   191 
  485    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   442 
  497  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   171 
  501    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   458 
  505  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   163 
  545    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   502 
  549  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1   119 
  565    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   522 
  589  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1    79 
  593    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   550 
  609  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1    59 
  617    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   574 
  625  C USDA026R_F07_BE444305Td06P043D03P032B011R1_053.ab1    43 
  629    USDA026F_F07_BE444305Td06P043D03P032B011F1_053.ab1   586 
Contig length: old 698, new 698

Contig length: old 698, new 698
New start: 0