No. words: 1499; after pruning: 1473


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:720)  699  0.00 0.00 0.42  USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1        1   722 (11)  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1   (46)   720     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1   766 
   59    USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1    13 
   79  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1   688 
   91    USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1    45 
  131  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1   636 
  139    USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1    93 
  159  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1   608 
  163    USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1   117 
  207  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1   560 
  483    USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1   437 
  495  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1   272 
  591    USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1   545 
  595  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1   172 
  603    USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1   557 
  607  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1   160 
  647    USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1   601 
  655  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1   112 
  679    USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1   633 
  687  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1    80 
  699    USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1   653 
  703  C USDA026R_G04_BE444305Td07P043C03P032B011R1_020.ab1    64 
  731    USDA026F_G04_BE444305Td07P043C03P032B011F1_020.ab1   685 
Contig length: old 778, new 779

Contig length: old 779, new 779
New start: 0