No. words: 1143; after pruning: 1117


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:714)  378  0.26 0.00 0.00  USDA026F_H04_BE444305Td08P043C03P032B011F1_018.ab1        1   386 (0)  C USDA026R_H04_BE444305Td08P043C03P032B011R1_018.ab1   (42)   715   330 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C USDA026R_H04_BE444305Td08P043C03P032B011R1_018.ab1   757 
   57    USDA026F_H04_BE444305Td08P043C03P032B011F1_018.ab1    15 
   73  C USDA026R_H04_BE444305Td08P043C03P032B011R1_018.ab1   685 
  101    USDA026F_H04_BE444305Td08P043C03P032B011F1_018.ab1    59 
  105  C USDA026R_H04_BE444305Td08P043C03P032B011R1_018.ab1   653 
Contig length: old 757, new 757

Contig length: old 757, new 757
New start: 0