No. words: 1293; after pruning: 1267


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:602)  592  0.00 0.00 0.17  USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1        1   603 (39)  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   (49)   602     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   651 
   61    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1    12 
   65  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   587 
  113    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1    64 
  141  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   511 
  149    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   100 
  193  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   459 
  201    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   152 
  209  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   443 
  213    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   164 
  225  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   427 
  229    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   180 
  249  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   403 
  257    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   208 
  317  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   335 
  337    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   288 
  345  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   307 
  353    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   304 
  365  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   287 
  369    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   320 
  381  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   271 
  389    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   340 
  413  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   239 
  421    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   372 
  441  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   211 
  445    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   396 
  465  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   187 
  473    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   424 
  477  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   175 
  481    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   432 
  489  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   163 
  493    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   444 
  509  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   143 
  525    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   476 
  545  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1   107 
  549    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   500 
  597  C USDA026R_H07_BE444305Td08P043D03P032B011R1_049.ab1    55 
  601    USDA026F_H07_BE444305Td08P043D03P032B011F1_049.ab1   552 
Contig length: old 690, new 691

Contig length: old 691, new 691
New start: 0