No. words: 1345; after pruning: 1319


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:716)  586  0.00 0.00 0.17  USDA026F_A05_BE444305Td09P043C03P032B011F1_047.ab1        1   598 (0)  C USDA026R_A05_BE444305Td09P043C03P032B011R1_047.ab1   (31)   716   120 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C USDA026R_A05_BE444305Td09P043C03P032B011R1_047.ab1   747 
   45    USDA026F_A05_BE444305Td09P043C03P032B011F1_047.ab1    14 
   53  C USDA026R_A05_BE444305Td09P043C03P032B011R1_047.ab1   695 
   57    USDA026F_A05_BE444305Td09P043C03P032B011F1_047.ab1    26 
   61  C USDA026R_A05_BE444305Td09P043C03P032B011R1_047.ab1   687 
   89    USDA026F_A05_BE444305Td09P043C03P032B011F1_047.ab1    58 
   93  C USDA026R_A05_BE444305Td09P043C03P032B011R1_047.ab1   655 
  129    USDA026F_A05_BE444305Td09P043C03P032B011F1_047.ab1    98 
  137  C USDA026R_A05_BE444305Td09P043C03P032B011R1_047.ab1   611 
Contig length: old 747, new 747

Contig length: old 747, new 747
New start: 0