No. words: 1284; after pruning: 1258


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.2 (1,1:619)  600  0.00 0.16 0.16  USDA026F_A08_BE444305Td09P043D03P032B011F1_064.ab1        4   618 (11)  C USDA026R_A08_BE444305Td09P043D03P032B011R1_064.ab1   (38)   617     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C USDA026R_A08_BE444305Td09P043D03P032B011R1_064.ab1   655 
  647    USDA026F_A08_BE444305Td09P043D03P032B011F1_064.ab1   612 
Contig length: old 664, new 664

Contig length: old 664, new 665
New start: 0 
I Change at: 638; seg lengths: entry 1, contig 0