No. words: 1312; after pruning: 1286


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.0 (1,1:625)  611  0.00 0.00 0.16  USDA026F_B08_BE444305Td10P043D03P032B011F1_062.ab1        1   623 (33)  C USDA026R_B08_BE444305Td10P043D03P032B011R1_062.ab1   (31)   625     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C USDA026R_B08_BE444305Td10P043D03P032B011R1_062.ab1   656 
  151    USDA026F_B08_BE444305Td10P043D03P032B011F1_062.ab1   120 
  159  C USDA026R_B08_BE444305Td10P043D03P032B011R1_062.ab1   498 
  259    USDA026F_B08_BE444305Td10P043D03P032B011F1_062.ab1   228 
  303  C USDA026R_B08_BE444305Td10P043D03P032B011R1_062.ab1   354 
  367    USDA026F_B08_BE444305Td10P043D03P032B011F1_062.ab1   336 
  411  C USDA026R_B08_BE444305Td10P043D03P032B011R1_062.ab1   246 
  443    USDA026F_B08_BE444305Td10P043D03P032B011F1_062.ab1   412 
  467  C USDA026R_B08_BE444305Td10P043D03P032B011R1_062.ab1   190 
  531    USDA026F_B08_BE444305Td10P043D03P032B011F1_062.ab1   500 
  539  C USDA026R_B08_BE444305Td10P043D03P032B011R1_062.ab1   118 
  547    USDA026F_B08_BE444305Td10P043D03P032B011F1_062.ab1   516 
  559  C USDA026R_B08_BE444305Td10P043D03P032B011R1_062.ab1    98 
  563    USDA026F_B08_BE444305Td10P043D03P032B011F1_062.ab1   532 
  575  C USDA026R_B08_BE444305Td10P043D03P032B011R1_062.ab1    82 
  583    USDA026F_B08_BE444305Td10P043D03P032B011F1_062.ab1   552 
  591  C USDA026R_B08_BE444305Td10P043D03P032B011R1_062.ab1    66 
  595    USDA026F_B08_BE444305Td10P043D03P032B011F1_062.ab1   564 
Contig length: old 686, new 687

Contig length: old 687, new 687
New start: 0