No. words: 1539; after pruning: 1513


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:788)  708  0.00 0.00 0.00  USDA009_C03_BE444505As01P017E01E07F1_027.ab1        1   739 (0)  C USDA009_C09_BE444505As01P017E01E07R1_075.ab1   (11)   789    51 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C USDA009_C09_BE444505As01P017E01E07R1_075.ab1   800 
   15    USDA009_C03_BE444505As01P017E01E07F1_027.ab1     4 
  403  C USDA009_C09_BE444505As01P017E01E07R1_075.ab1   398 
Contig length: old 800, new 800

Contig length: old 800, new 800
New start: 0