No. words: 1637; after pruning: 1597


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:779)  741  0.13 0.00 0.13  USDA009_E03_BE444505At01P017E01E07F1_023.ab1        1   780 (34)  C USDA009_E09_BE444505At01P017E01E07R1_071.ab1   (44)   779     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1  C USDA009_E09_BE444505At01P017E01E07R1_071.ab1   823 
   48    USDA009_E03_BE444505At01P017E01E07F1_023.ab1     4 
   60  C USDA009_E09_BE444505At01P017E01E07R1_071.ab1   764 
   64    USDA009_E03_BE444505At01P017E01E07F1_023.ab1    20 
  532  C USDA009_E09_BE444505At01P017E01E07R1_071.ab1   292 
  536    USDA009_E03_BE444505At01P017E01E07F1_023.ab1   492 
  552  C USDA009_E09_BE444505At01P017E01E07R1_071.ab1   272 
  556    USDA009_E03_BE444505At01P017E01E07F1_023.ab1   512 
  600  C USDA009_E09_BE444505At01P017E01E07R1_071.ab1   224 
  604    USDA009_E03_BE444505At01P017E01E07F1_023.ab1   560 
  644  C USDA009_E09_BE444505At01P017E01E07R1_071.ab1   180 
  692    USDA009_E03_BE444505At01P017E01E07F1_023.ab1   648 
  700  C USDA009_E09_BE444505At01P017E01E07R1_071.ab1   124 
  712    USDA009_E03_BE444505At01P017E01E07F1_023.ab1   668 
  724  C USDA009_E09_BE444505At01P017E01E07R1_071.ab1   100 
  792    USDA009_E03_BE444505At01P017E01E07F1_023.ab1   748 
  800  C USDA009_E09_BE444505At01P017E01E07R1_071.ab1    24 
  804    USDA009_E03_BE444505At01P017E01E07F1_023.ab1   760 
Contig length: old 857, new 858

Contig length: old 858, new 858
New start: 0