No. words: 1321; after pruning: 1295


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:489)  465  0.00 0.00 0.00  USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1        1   490 (162)  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1   (179)   490     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1   669 
  203    USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1    24 
  207  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1   463 
  223    USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1    44 
  227  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1   443 
  235    USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1    56 
  243  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1   427 
  263    USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1    84 
  267  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1   403 
  279    USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1   100 
  295  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1   375 
  299    USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1   120 
  303  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1   367 
  307    USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1   128 
  319  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1   351 
  327    USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1   148 
  523  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1   147 
  527    USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1   348 
  587  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1    83 
  595    USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1   416 
  603  C USDA009_G09_BE444505Ld01P017E01E07R1_067.ab1    67 
  611    USDA009_G03_BE444505Ld01P017E01E07F1_019.ab1   432 
Contig length: old 831, new 831

Contig length: old 831, new 831
New start: 0