No. words: 1567; after pruning: 1541


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.8 (1,1:761)  724  0.13 0.00 0.00  USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1        1   762 (7)  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   (36)   762     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   798 
   40    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1     4 
   68  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   731 
   72    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1    36 
  384  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   415 
  392    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1   356 
  448  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   351 
  472    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1   436 
  548  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   251 
  556    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1   520 
  568  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   231 
  572    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1   536 
  576  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   223 
  584    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1   548 
  588  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   211 
  596    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1   560 
  612  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   187 
  624    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1   588 
  628  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   171 
  664    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1   628 
  668  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   131 
  684    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1   648 
  688  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   111 
  692    USDA009_H03_BE444505Ld02P017E01E07F1_017.ab1   656 
  696  C USDA009_H09_BE444505Ld02P017E01E07R1_065.ab1   103 
Contig length: old 805, new 798

Contig length: old 798, new 798
New start: 0