No. words: 1270; after pruning: 1244


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:488)  464  0.00 0.00 0.00  USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1        1   489 (109)  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   (183)   489     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   672 
  207    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1    24 
  211  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   462 
  235    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1    52 
  247  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   426 
  251    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1    68 
  259  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   414 
  267    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1    84 
  271  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   402 
  287    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1   104 
  295  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   378 
  299    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1   116 
  303  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   370 
  311    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1   128 
  323  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   350 
  327    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1   144 
  339  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   334 
  343    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1   160 
  423  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   250 
  431    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1   248 
  491  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   182 
  499    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1   316 
  523  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1   150 
  531    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1   348 
  591  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1    82 
  595    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1   412 
  615  C USDA009_C10_BE444505Ld05P017E01E07R1_076.ab1    58 
  619    USDA009_C04_BE444505Ld05P017E01E07F1_028.ab1   436 
Contig length: old 781, new 781

Contig length: old 781, new 781
New start: 0