No. words: 1238; after pruning: 1212


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:491)  462  0.00 0.00 0.20  USDA009_D04_BE444505Ld06P017E01E07F1_026.ab1        1   492 (77)  C USDA009_D10_BE444505Ld06P017E01E07R1_074.ab1   (178)   491     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA009_D10_BE444505Ld06P017E01E07R1_074.ab1   669 
  249    USDA009_D04_BE444505Ld06P017E01E07F1_026.ab1    72 
  253  C USDA009_D10_BE444505Ld06P017E01E07R1_074.ab1   417 
  285    USDA009_D04_BE444505Ld06P017E01E07F1_026.ab1   108 
  293  C USDA009_D10_BE444505Ld06P017E01E07R1_074.ab1   377 
  297    USDA009_D04_BE444505Ld06P017E01E07F1_026.ab1   120 
  321  C USDA009_D10_BE444505Ld06P017E01E07R1_074.ab1   349 
  345    USDA009_D04_BE444505Ld06P017E01E07F1_026.ab1   168 
  525  C USDA009_D10_BE444505Ld06P017E01E07R1_074.ab1   145 
  529    USDA009_D04_BE444505Ld06P017E01E07F1_026.ab1   352 
  585  C USDA009_D10_BE444505Ld06P017E01E07R1_074.ab1    85 
  593    USDA009_D04_BE444505Ld06P017E01E07F1_026.ab1   416 
  613  C USDA009_D10_BE444505Ld06P017E01E07R1_074.ab1    57 
  617    USDA009_D04_BE444505Ld06P017E01E07F1_026.ab1   440 
Contig length: old 746, new 746

Contig length: old 746, new 746
New start: 0